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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sgol1, shugoshin-like 1 (S. pombe)
Sequence ID:NM_028232
Entrez Gene ID:72415
Ensembl ID:ENSMUSG00000023940

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, ear, embryonic tissue, eye, fetus, gastrointestinal tract, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pooled tissue, retina, skin, spleen, stem cell, thymus, uncharacterized tissue
  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17 C|17

Chromosomal Position (from UCSC)

Chromosomal Position:17: 53676481 - 53689223

NM_028232 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
119255381411153816035
192621155381623153816420
211629075381823453819025
290829515382076953820812
295230285382287853822954
302932255382640853826604
322633735382703553827182
337435045382731453827444
350536095382853553828639

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30604765Full LengthBC089014shugoshin-like 1 (S. pombe)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_082508  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_028232 NP_082508 Q9CXH7 Shugoshin_C

Related Sequences

 
mRNAGenPeptSwissProt
BC089014 AAH89014 Q9CXH7
AK014357 BAB29295 Q9CXH7
AK049517 BAC33789 Q9CXH7
AB193067 BAD95540 Q9CXH7
AB193068 BAD95541 Q9CXH7
AK154188 BAE32427 Q9CXH7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sgol1 NP_082508 R.norvegicus Sgol1 363174   XP_343515 77
H.sapiens SGOL1 151648 Gene Info NP_001012409 55

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)