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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Stx5a, syntaxin 5A
Sequence ID:NM_001167799
NM_019829
Entrez Gene ID:56389
Ensembl ID:ENSMUSG00000010110

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19 A|19

Chromosomal Position (from UCSC)

Chromosomal Position:19: 8742434 - 8755068

 Exon Info From UCSC:
NM_001167799
NM_019829

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2655845Full LengthBC004849syntaxin 5A
3487476Full LengthBC021883syntaxin 5A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062803  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001167799 NP_001161271    
NM_019829 NP_062803 Q8K1E0 Syntaxin
SNARE

Related Sequences

 
mRNAGenPeptSwissProt
AF232709 AAF36981 Q8K1E0
BC004849 AAH04849 Q8K1E0
BC021883 AAH21883 Q8K1E0
AK166087 BAE38563 Q8K1E0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Stx5a NP_001161271 R.norvegicus Stx5 65134   NP_113892 98
H.sapiens STX5 6811 Gene Info NP_003155 94
D.melanogaster Syx5 34966   NP_523582 55
N.crassa NCU01907 3881684   XP_965538 44
S.pombe sed5 2541263   NP_595576 43
A.thaliana SYP32 822024   NP_189078 42
C.elegans syn-3 179611   NP_505968 42
S.cerevisiae SED5 850713   NP_013126 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)