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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Nptn, neuroplastin
Sequence ID:NM_009145
Entrez Gene ID:20320
Ensembl ID:ENSMUSG00000032336

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9 B|9

Chromosomal Position (from UCSC)

Chromosomal Position:9: 58582405 - 58652878

NM_009145 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12875843004658430332
2884565847149358471661
4575515847564058475734
5526855848847558488608
6869595849133558491608
9609815849830358498324
98210565849906458499138
105720775849966558500685

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033171  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009145 NP_033171   ig
I-set

Related Sequences

 
mRNAGenPeptSwissProt
D50463 BAA09054 P97300
AK075610 BAC35855 P97300
AK076624 BAC36420 P97300
AK153930 BAE32261 P97300

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)