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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Tspo, translocator protein
Sequence ID:NM_009775
Entrez Gene ID:12257
Ensembl ID:ENSMUSG00000041736

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15 E1|15 43.3 cM

Chromosomal Position (from UCSC)

Chromosomal Position:15: 83563599 - 83574201

NM_009775 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1728339400283394073
732838340181483402024
2844228340262983402767
4238568340419983404632

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3493196Full LengthBC002055translocator protein

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033905  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009775 NP_033905 P50637 TspO_MBR

Related Sequences

 
mRNAGenPeptSwissProt
L17306 AAA20127 P50637
Q541E3
BC002055 AAH02055 Q99M32
D21207 BAA04749 P50637
AK149743 BAE29056 P50637
Q541E3
AK150516 BAE29628 P50637
Q541E3
AK151421 BAE30386 P50637
Q541E3
AK151569 BAE30511 P50637
Q541E3
AK151824 BAE30721 P50637
Q541E3
AK152082 BAE30932 P50637
Q541E3
AK152827 BAE31528 P50637
Q541E3
AK153159 BAE31769 P50637
Q541E3
AK153273 BAE31860 P50637
Q541E3
AK156489 BAE33730 P50637
Q541E3
AK165450 BAE38192 P50637
Q541E3
AK165822 BAE38396 P50637
Q541E3
AK166125 BAE38585 P50637
Q541E3
AK172384 BAE42976 P50637
Q541E3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tspo NP_033905 R.norvegicus Tspo 24230   NP_036647 95
H.sapiens TSPO 706 Gene Info NP_000705 81
A.gambiae AgaP_AGAP000426 1271819   XP_310673 46
D.melanogaster CG2789 33231   NP_608531 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)