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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Trpc1, transient receptor potential cation channel, subfamily C, member 1
Sequence ID:NM_011643
Entrez Gene ID:22063
Ensembl ID:ENSMUSG00000032839

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 E4|9 51.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:9: 95706739 - 95749906

 Exon Info From UCSC:
NM_011643

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860600Full LengthBC137581transient receptor potential cation channel, subfamily C, member 1
9053274Full LengthBC144726transient receptor potential cation channel, subfamily C, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035773  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011643 NP_035773 Q61056 Ion_trans
TRP_2

Related Sequences

 
mRNAGenPeptSwissProt
U73625 AAB50622 Q61056
U40980 AAC52699 Q61056
U95167 AAC53162 Q61056
AF191551 AAF05725 Q61056
BC137581 AAI37582 B2RPS7
BC144726 AAI44727 B7ZMP6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Trpc1 NP_035773 H.sapiens TRPC1 7220 Gene Info NP_003295 100
R.norvegicus Trpc1 89821   NP_446010 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)