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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ggps1, geranylgeranyl diphosphate synthase 1
Sequence ID:NM_010282
Entrez Gene ID:14593
Ensembl ID:ENSMUSG00000021302

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13 A1|13 8.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:13: 14053678 - 14063289

NM_010282 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1920271414471314146721
202820981414741614147486
209921911415006214150154
219223871415547214155667

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2651229Full LengthBC006798geranylgeranyl diphosphate synthase 1
6469191Full LengthBC069913geranylgeranyl diphosphate synthase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034412  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_010282 NP_034412 Q3V0T8
Q9WTN0
EC 2.5.1.29
EC 2.5.1.10
EC 2.5.1.1
polyprenyl_synt

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC006798 AAH06798 Q9CZZ6  
BC069913 AAH69913 Q3V0T8
Q9WTN0
EC 2.5.1.29
EC 2.5.1.10
EC 2.5.1.1
AB016044 BAA76512 Q3V0T8
Q9WTN0
EC 2.5.1.29
EC 2.5.1.10
EC 2.5.1.1
AK011980 BAB27955 Q9CZZ6  
AK132907 BAE21415 Q3V0T8
Q9WTN0
EC 2.5.1.29
EC 2.5.1.10
EC 2.5.1.1
AK138564 BAE23699 Q3UUC8  
AK163652 BAE37439 Q3TQE5  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ggps1 NP_034412 R.norvegicus Ggps1 291211   NP_001007627 98
H.sapiens GGPS1 9453 Gene Info NP_001032354 94
A.gambiae AgaP_AGAP006894 1270183   XP_308860 60
D.melanogaster qm 38816   NP_001163370 59
N.crassa NCU01427 3876842   XP_960695 53
S.cerevisiae BTS1 856036   NP_015256 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)