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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Reep1, receptor accessory protein 1
Sequence ID:NM_178608
Entrez Gene ID:52250
Ensembl ID:ENSMUSG00000052852

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 C1|6 31.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:6: 71707846 - 71809943

NM_178608 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11427165785371657994
1432157170635771706429
2162927171135871711434
2934137172318171723301
4145277173071571730828
5287057174514071745317
70636177175778471760695

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6417744Full LengthBC046826receptor accessory protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_848723  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_178608 NP_848723 Q8BGH4 TB2_DP1_HVA22

Related Sequences

 
mRNAGenPeptSwissProt
BC046826 AAH46826 Q8BGH4
AY562229 AAT70674 Q8BGH4
AK035238 BAC28995 Q8BGH4
AK045056 BAC32200 Q8BGH4
AK053158 BAC35288 Q8BGH4
AK136916 BAE23168 Q8BGH4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Reep1 NP_848723 R.norvegicus Reep1 362384   NP_001102103 99
H.sapiens REEP1 65055 Gene Info NP_075063 98
A.gambiae AgaP_AGAP011331 1270607   XP_309319 61
A.thaliana AT5G42560 834262   NP_568606 37
A.thaliana HVA22G 843904   NP_177699 35
A.thaliana HVA22H 838584   NP_564100 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)