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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Mm. Cdx1, caudal type homeobox 1
Sequence ID:NM_009880
Entrez Gene ID:12590
Ensembl ID:ENSMUSG00000024619

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

Cytogenetic Location (from UniGene)

Cytogenetic Location:18 E1|18 30.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:18: 61018864 - 61036199

NM_009880 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4224352Full LengthBC019986caudal type homeo box 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034010  

Protein Infomation

NM_009880 NP_034010 P18111 Homeobox

Related Sequences

M37163 AAA37412 P18111
BC019986 AAH19986 P18111

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
M.musculus Cdx1 NP_034010 R.norvegicus Cdx1 364883   XP_344692 94
H.sapiens CDX1 1044 Gene Info NP_001795 86

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)