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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. H2-M3, histocompatibility 2, M region locus 3
Sequence ID:NM_013819
Entrez Gene ID:14991
Ensembl ID:ENSMUSG00000016206

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 20.38 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 37270631 - 37272684

NM_013819 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11013740717837407278
1023713740746637407735
3726473740794237408217
6489233740921337409488
92410283740959237409696
102910613741066337410695
106211083741081037410856
110914253741111337411429

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4007538Full LengthBC031984histocompatibility 2, M region locus 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038847  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013819 NP_038847 Q31093 MHC_I
C1-set

Related Sequences

 
mRNAGenPeptSwissProt
L36073 AAA37768  
L36074 AAA37769  
L36071 AAA37770  
U18797 AAA60335 Q31093
BC031984 AAH31984 Q8MHM0
AB267096 BAF02294 Q0WXH3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus H2-M3 NP_038847 R.norvegicus RT1-M3-1 24747   NP_075210 83
H.sapiens HLA-F 3134 Gene Info NP_001091949 66

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)