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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Bdnf, brain derived neurotrophic factor
Sequence ID:NM_001048139
NM_001048141
NM_001048142
NM_007540
Entrez Gene ID:12064
Ensembl ID:ENSMUSG00000048482

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 E3|2 62.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 109693635 - 109724899

 Exon Info From UCSC:
NM_001048139
NM_001048141
NM_001048142
NM_007540

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
1397218Full LengthBC034862brain derived neurotrophic factor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031566  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001048139 NP_001041604 P21237  
NM_001048141 NP_001041606    
NM_001048142 NP_001041607    
NM_007540 NP_031566 P21237
Q541P3
NGF

Related Sequences

 
mRNAGenPeptSwissProt
BC034862 AAH34862 P21237
Q541P3
AY057908 AAL27785 P21237
Q541P3
AY057909 AAL27786 P21237
Q541P3
AY057910 AAL27787 P21237
Q541P3
AY057911 AAL27788 P21237
Q541P3
AY057912 AAL27789 P21237
Q541P3
AY057913 AAL27790 P21237
Q541P3
AY057914 AAL27791 P21237
Q541P3
AY231131 AAO74602 P21237
Q541P3
AY231132 AAO74603 P21237
Q541P3
EF125669 ABM30155 Q541P3
EF125670 ABM30156 Q541P3
EF125671 ABM30157 Q541P3
EF125672 ABM30158 Q541P3
EF125673 ABM30159 Q541P3
EF125674 ABM30160 Q541P3
EF125681 ABM30167 Q541P3
EF125682 ABM30168 Q541P3
EF125683 ABM30169 Q541P3
EF125684 ABM30170 Q541P3
EF125685 ABM30171 Q541P3
HM623886 ADN53234 E2IUB1
AK033127 BAC28164 Q8CCH9
X55573 CAA39159 P21237
Q541P3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Bdnf NP_031566 R.norvegicus Bdnf 24225   NP_036645 99
H.sapiens BDNF 627 Gene Info NP_001137282 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)