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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Trim54, tripartite motif-containing 54
Sequence ID:NM_021447
Entrez Gene ID:58522
Ensembl ID:ENSMUSG00000062077

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 B1|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 31116711 - 31137626

NM_021447 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14663141898431419449
4676393143341431433586
6408113143436031434531
8129073143642231436517
90811413143841531438648
114211643143912531439147
116512893143926031439384
129013823143949331439585
138315323143984931439998

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40052466Full LengthBC107258tripartite motif-containing 54
40052471Full LengthBC107259tripartite motif-containing 54

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_067422  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021447 NP_067422 Q9ERP3 zf-C3HC4
zf-B_box

Related Sequences

 
mRNAGenPeptSwissProt
AF294790 AAG03076 Q9ERP3
BC107258 AAI07259 Q3KNI8
BC107259 AAI07260 Q3KNI7
AK019655 BAC25601 Q8CEL3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Trim54 NP_067422 R.norvegicus Trim54 362708   NP_001013235 97
H.sapiens TRIM54 57159 Gene Info NP_912730 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)