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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Jph1, junctophilin 1
Sequence ID:NM_020604
Entrez Gene ID:57339
Ensembl ID:ENSMUSG00000042686

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1|1 A4

Chromosomal Position (from UCSC)

Chromosomal Position:1: 16997463 - 17097798

NM_020604 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1961698754416987639
977401699397116994614
7418591700611917006237
86016191708137817082137
162021921708730617087878

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860688Full LengthBC137669junctophilin 1
40129762Full LengthBC120839junctophilin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065629  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_020604 NP_065629 Q9ET80 MORN

Related Sequences

 
mRNAGenPeptSwissProt
BC120839 AAI20840 Q9ET80
BC137669 AAI37670 Q9ET80
AB024445 BAB12043 Q9ET80
AK081751 BAC38318 Q8C4L7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Jph1 NP_065629 R.norvegicus Jph1 297748   NP_001100100 96
H.sapiens JPH1 56704 Gene Info NP_065698 94
D.melanogaster jp 34274   NP_001188757 46
A.thaliana AT1G21920 838794   NP_173610 38
A.thaliana AT1G77660 844102   NP_177889 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)