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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ccr5, chemokine (C-C motif) receptor 5
Sequence ID:NM_009917
Entrez Gene ID:12774
Ensembl ID:ENSMUSG00000079227

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 F|9 72.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:9: 124121572 - 124125938

NM_009917 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
193124036281124036373
942926124039089124041921

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40045777Full LengthBC105643chemokine (C-C motif) receptor 5
40045779Full LengthBC103574chemokine (C-C motif) receptor 5
40045780Full LengthBC103587chemokine (C-C motif) receptor 5
40045781Full LengthBC103586chemokine (C-C motif) receptor 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034047  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009917 NP_034047 P51682 7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
U47036 AAC52454 P51682
BC103574 AAI03575 P51682
BC103586 AAI03587 P51682
BC103587 AAI03588 P51682
BC105643 AAI05644 Q3TDA4
D83648 BAA12024 P51682
AK141906 BAE24879 P51682
AK154595 BAE32698 P51682
AK155628 BAE33354 P51682
AK155867 BAE33471 P51682
AK170303 BAE41700 Q3TDA4
X94151 CAA63867 P51682

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ccr5 NP_034047 R.norvegicus Ccr5 117029   NP_446412 92
H.sapiens CCR5 1234 Gene Info NP_001093638 82

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta