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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Kdm5c, lysine (K)-specific demethylase 5C
Sequence ID:NM_013668
Entrez Gene ID:20591
Ensembl ID:ENSMUSG00000025332

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:X F2-F4|X 64.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:X: 152233518 - 152233679

 Exon Info From UCSC:
NM_013668

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6405943Full LengthBC043096jumonji, AT rich interactive domain 1C (Rbp2 like)
6405943Full LengthBC054550jumonji, AT rich interactive domain 1C (Rbp2 like)
3591116IncompleteBC038940jumonji, AT rich interactive domain 1C (Rbp2 like)
4191422IncompleteBC026777jumonji, AT rich interactive domain 1C (Rbp2 like)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038696  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013668 NP_038696   PHD
ARID
JmjC
JmjN
zf-C5HC2
PLU-1

Related Sequences

 
mRNAGenPeptSwissProt
L29563 AAA62384 P41230
AF039894 AAB96762 P41230
AF127245 AAD53049 P41230
BC026777 AAH26777 Q05CE7
BC038940 AAH38940 Q8CGG4
BC043096 AAH43096 P41230
BC054550 AAH54550 P41230
AK008105 BAB25462 P41230
AK129096 BAC97906 P41230
AK155279 BAE33161 P41230
AK155427 BAE33260 P41230
AK155651 BAE33367 P41230
AK158340 BAE34464 P41230
Z29651 CAA82759 P41230

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Kdm5c NP_038696 H.sapiens KDM5C 8242 Gene Info NP_004178 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)