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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Carhsp1, calcium regulated heat stable protein 1
Sequence ID:NM_025821
Entrez Gene ID:52502
Ensembl ID:ENSMUSG00000008393

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16 A1|16 1.7 cM

Chromosomal Position (from UCSC)

Chromosomal Position:16: 8660940 - 8664415

NM_025821 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1251786586798661195
2518264086636798663801
2641280886643478664514
2809284986722058672245

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4166353Full LengthBC011225calcium regulated heat stable protein 1
6812962Full LengthBC086754calcium regulated heat stable protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080097  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_025821 NP_080097 Q5M9P7
Q9CR86
CSD

Related Sequences

 
mRNAGenPeptSwissProt
BC011225 AAH11225 Q5M9P7
Q9CR86
BC086754 AAH86754 Q5M9P7
Q9CR86
AF414101 AAL07470 Q5M9P7
Q9CR86
AK002853 BAB22408 Q5M9P7
Q9CR86
AK003926 BAB23077 Q5M9P7
Q9CR86
AK004711 BAB23495 Q5M9P7
Q9CR86
AK143612 BAE25463 Q5M9P7
Q9CR86
AK149875 BAE29139 Q5M9P7
Q9CR86
AK150245 BAE29409 Q3UD53
AK154460 BAE32601 Q3U434
AK155318 BAE33186 Q5M9P7
Q9CR86
AK158252 BAE34427 Q5M9P7
Q9CR86
AK165373 BAE38151 Q5M9P7
Q9CR86
AK168504 BAE40388 Q5M9P7
Q9CR86
AK170411 BAE41777 Q5M9P7
Q9CR86
AK171282 BAE42365 Q5M9P7
Q9CR86

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Carhsp1 NP_080097 M.musculus Gm9791 100040232   XP_001474936 99
R.norvegicus Carhsp1 260416   NP_690003 98
H.sapiens CARHSP1 23589 Gene Info NP_001035941 97
A.gambiae AgaP_AGAP005641 1276327   XP_315660 63
D.melanogaster CG9705 39875   NP_730197 56

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)