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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Mm. Col9a3, Collagen, type IX, alpha 3
Sequence ID:NM_009936
Entrez Gene ID:12841
Ensembl ID:ENSMUSG00000027570

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 H4|2 108.0

Chromosomal Position (from UCSC)

Chromosomal Position:2: 180614143 - 180622189

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5003028Full LengthBC030945collagen, type IX, alpha 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034066  

Protein Infomation

NM_009936 NP_034066 Q8BSX1 Collagen

Related Sequences

AF237721 AAF67684 Q9JKK4
BC030945 AAH30945 Q8K2L1
BC115437 AAI15438 Q14C48
AF349718 AAL56219 Q8VHY3
AK003258 BAB22674 Q9CTK5
AK030350 BAC26915 Q8BSX1
X91012 CAA62494 Q61248

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
M.musculus Col9a3 NP_034066 H.sapiens COL9A3 1299 Gene Info NP_001844 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)