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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ergic3, ERGIC and golgi 3
Sequence ID:NM_025516
Entrez Gene ID:66366
Ensembl ID:ENSMUSG00000005881

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 H2|2 92.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 156008123 - 156018277

 Exon Info From UCSC:
NM_025516

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5375947Full LengthBC043720ERGIC and golgi 3
6819420Full LengthBC057130ERGIC and golgi 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_079792  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_025516 NP_079792 Q9CQE7 DUF1692

Related Sequences

 
mRNAGenPeptSwissProt
BC043720 AAH43720 Q9CQE7
BC057130 AAH57130 Q9CQE7
AK009350 BAB26233 Q9CQE7
AK013942 BAB29073 Q9CQE7
AK050285 BAC34166 Q9CQE7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ergic3 NP_079792 R.norvegicus Ergic3 296306   NP_001100003 99
H.sapiens ERGIC3 51614 Gene Info NP_938408 98
A.thaliana AT1G36050 840509   NP_001154394 53
A.thaliana AT1G22200 838825   NP_564162 49
D.melanogaster CG7011 39657   NP_648758 49
A.gambiae AgaP_AGAP012144 1280532   XP_320382 46
C.elegans erv-46 181652   NP_510575 42
N.crassa NCU08607 3880964   XP_964815 42
S.cerevisiae ERV46 851256   NP_009358 41
S.pombe SPAC24B11.08c 2541538   NP_592845 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)