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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ifna2, Interferon alpha 2
Sequence ID:NM_010503
Entrez Gene ID:15965
Ensembl ID:ENSMUSG00000078354

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 C4|4 42.6

Chromosomal Position (from UCSC)

Chromosomal Position:4: 88683206 - 88683777

NM_010503 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
15738832911088329682

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100015694Full LengthBC148713interferon alpha 2
40043683IncompleteBC100699interferon alpha 2
40043688IncompleteBC100688interferon alpha 2
40043690IncompleteBC100689interferon alpha 2
40043691IncompleteBC114423interferon alpha 2
40043694IncompleteBC100698interferon alpha 2
100014776BC141454interferon alpha 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034633  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010503 NP_034633 Q496V3
P01573
Interferon

Related Sequences

 
mRNAGenPeptSwissProt
K01411 AAA37885 P01573
BC100688 AAI00689 Q496W3
BC100689 AAI00690 Q496V3
P01573
BC100698 AAI00699 Q496V3
P01573
BC100699 AAI00700 Q496V3
P01573
BC114423 AAI14424 Q1WWM6
BC141454 AAI41455  
BC148713 AAI48714  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ifna2 NP_034633 M.musculus Ifna11 15964 Gene Info NP_032359 89
M.musculus Ifna1 15962 Gene Info NP_034632 86
M.musculus Ifna12 242519 Gene Info NP_796335 85
M.musculus Ifnab 15974 Gene Info NP_032362 84
M.musculus Ifna6 15969 Gene Info NP_996754 83
M.musculus Gm12597 242517 Gene Info NP_996753 83
M.musculus Ifna5 15968 Gene Info NP_034635 82
M.musculus Ifna7 15970 Gene Info NP_032360 81
M.musculus Ifna9 15972 Gene Info NP_034637 81
M.musculus Ifna14 404549 Gene Info NP_996858 81
M.musculus Gm13280 230398 Gene Info NP_996750 80
M.musculus Ifna13 230396 Gene Info NP_796321 80
R.norvegicus LOC680208 680208   XP_001056120 76
R.norvegicus Ifna5 690894   XP_001076062 76
R.norvegicus RGD1561246 502959   XP_578464 75
H.sapiens IFNA13 3447 Gene Info NP_008831 59
H.sapiens IFNA1 3439 Gene Info NP_076918 59

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)