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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Jtb, jumping translocation breakpoint
Sequence ID:NM_206924
Entrez Gene ID:23922
Ensembl ID:ENSMUSG00000027937

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3 F1|3

Chromosomal Position (from UCSC)

Chromosomal Position:3: 90231685 - 90235837

NM_206924 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14449003551890035961
4454829003611690036153
4835659003635090036432
5666459003784490037923
64611039003930490039761

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3582930Full LengthBC008139jumping translocation breakpoint

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_996807  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_206924 NP_996807 Q542D4
O88824
JTB

Related Sequences

 
mRNAGenPeptSwissProt
BC008139 AAH08139 Q542D4
O88824
AB016490 BAA33733 Q542D4
O88824
AK004469 BAB23317 Q9D0T9
AK089048 BAC40719 Q542D4
O88824
AK146337 BAE27091 Q3UJR4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Jtb NP_996807 R.norvegicus Jtb 29439   NP_062086 96
H.sapiens JTB 10899 Gene Info NP_006685 86

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)