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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Prop1, paired like homeodomain factor 1
Sequence ID:NM_008936
Entrez Gene ID:19127
Ensembl ID:ENSMUSG00000044542

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B1.3|11 25.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 50950805 - 50953632

NM_008936 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14395076430750764745
4406635076552750765750
66410005076679750767133

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100064078Full LengthBC160334paired like homeodomain factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032962  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008936 NP_032962 P97458 Homeobox

Related Sequences

 
mRNAGenPeptSwissProt
U77946 AAB38884 P97458
BC160334 AAI60334  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Prop1 NP_032962 R.norvegicus Prop1 266738   NP_705891 87
H.sapiens PROP1 5626 Gene Info NP_006252 74

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)