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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Setd8, SET domain containing (lysine methyltransferase) 8
Sequence ID:NM_030241
Entrez Gene ID:67956
Ensembl ID:ENSMUSG00000049327

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5 F|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 124460758 - 124462273

NM_030241 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
186124889938124890023
87202124895977124896092
203359124897222124897378
360579124900669124900888
580667124901294124901381
668727124907067124907126
728918124909783124909973
9192738124910496124912315

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4978041Full LengthBC108333SET domain containing (lysine methyltransferase) 8
2651266IncompleteBC003444SET domain containing (lysine methyltransferase) 8

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_084517  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_030241 NP_084517   SET

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC108333 AAI08334 Q2YDW7 EC 2.1.1.43
AK010593 BAC25304 Q8C1L9  
AK030904 BAC27178 Q2YDW7 EC 2.1.1.43

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Setd8 NP_084517 R.norvegicus Setd8 689820   XP_001072149 97
H.sapiens SETD8 387893 Gene Info NP_065115 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)