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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Vtcn1, V-set domain containing T cell activation inhibitor 1
Sequence ID:NM_178594
Entrez Gene ID:242122
Ensembl ID:ENSMUSG00000051076

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3 F2.2|3

Chromosomal Position (from UCSC)

Chromosomal Position:3: 100825458 - 100895672

NM_178594 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1132100629381100629512
133197100678683100678747
198545100687667100688014
546824100692086100692364
825997100696471100696643
9982622100699220100700844

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
1477676Full LengthBC032925V-set domain containing T cell activation inhibitor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_848709  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_178594 NP_848709 Q7TSP5 V-set

Related Sequences

 
mRNAGenPeptSwissProt
BC032925 AAH32925 Q7TSP5
AY280973 AAP37284 Q7TSP5
AY322147 AAP88965 Q7TSP5
AY346099 AAQ24205 Q7TSP5
AK143276 BAE25330 Q7TSP5
AK145664 BAE26576 Q7TSP5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Vtcn1 NP_848709 R.norvegicus Vtcn1 295322   NP_001019415 98
H.sapiens VTCN1 79679 Gene Info NP_078902 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)