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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ccl6, chemokine (C-C motif) ligand 6
Sequence ID:NM_009139
Entrez Gene ID:20305
Ensembl ID:ENSMUSG00000018927

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 C|11 47.51 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 83588791 - 83592983

NM_009139 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
110548340138783402440
105511668340280483402915
116712148340325883403305
121514368340636783406588

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3492808Full LengthBC002073chemokine (C-C motif) ligand 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033165  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009139 NP_033165 P27784 IL8

Related Sequences

 
mRNAGenPeptSwissProt
M58004 AAA37329 P27784
AF128188 AAF22529 P27784
AF128189 AAF22530 P27784
AF128190 AAF22531 P27784
AF128191 AAF22532 P27784
AF128192 AAF22533 P27784
BC002073 AAH02073 P27784
AK002697 BAB22291 P27784
AK008547 BAB25734 P27784
AK150336 BAE29478 P27784
AK154553 BAE32672 P27784

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ccl6 NP_033165 R.norvegicus Ccl6 287910   NP_001004202 80

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)