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Gene Info

Gene Information For:Mm. Oat, ornithine aminotransferase
Sequence ID:NM_016978
Entrez Gene ID:18242
Ensembl ID:ENSMUSG00000030934

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7 F3|7 63.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:7: 132557625 - 132576389

NM_016978 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1856139749157139750012
8571001139751328139751472
10021115139752434139752547
11161244139753466139753594
12451367139754269139754391
13681495139755889139756016
14961591139758451139758546
15921816139758748139758972
18172051139761588139761822
20522155139767977139768080

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3498240Full LengthBC008119ornithine aminotransferase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058674  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_016978 NP_058674 P29758
Q3TG75
EC 2.6.1.13 Aminotran_3

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC008119 AAH08119 P29758
Q3TG75
EC 2.6.1.13
AK145877 BAE26718 Q3UKT3  
AK146413 BAE27150 Q3UJK5  
AK168851 BAE40673 P29758
Q3TG75
EC 2.6.1.13
X64837 CAA46049 P29758
Q3TG75
EC 2.6.1.13

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Oat NP_058674 R.norvegicus Oat 64313   NP_071966 98
H.sapiens OAT 4942 Gene Info NP_000265 91
A.gambiae AgaP_AGAP004793 1278432   XP_318019 72
D.melanogaster Oat 40145   NP_649139 70
C.elegans C16A3.10 175908   NP_741194 66
S.pombe SPBC21C3.08c 2540626   NP_596588 57
S.cerevisiae CAR2 851158   NP_013542 55
N.crassa NCU00194 3872557   XP_956417 55
P.falciparum PFF0435w 3885911   XP_966078 55
A.thaliana DELTA-OAT 834660   NP_199430 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta