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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Stfa3, stefin A3
Sequence ID:NM_025288
Entrez Gene ID:20863
Ensembl ID:ENSMUSG00000054905

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16 B3|16 22.85 cM

Chromosomal Position (from UCSC)

Chromosomal Position:16: 36450536 - 36455392

NM_025288 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11983645062236450819
1993003645223636452337
3014123645536636455477

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40051891Full LengthBC107224stefin A3
40051892Full LengthBC107225stefin A3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_079564  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_025288 NP_079564 P35173 Cystatin

Related Sequences

 
mRNAGenPeptSwissProt
BC107224 AAI07225 P35173
BC107225 AAI07226 P35173
AY169236 AAN87899 P35173
AK014349 BAB29290 P35173

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Stfa3 NP_079564 R.norvegicus Stfa2l1 408214   NP_001004129 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)