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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Polr1a, polymerase (RNA) I polypeptide A
Sequence ID:NM_009088
Entrez Gene ID:20019
Ensembl ID:ENSMUSG00000049553

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 C1|6 31.2 cM

Chromosomal Position (from UCSC)

Chromosomal Position:6: 71909162 - 71979360

 Exon Info From UCSC:
NM_009088

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6505567Full LengthBC053744polymerase (RNA) I polypeptide A
3256937IncompleteBC010254polymerase (RNA) I polypeptide A
4016101IncompleteBC034785polymerase (RNA) I polypeptide A
6467447IncompleteBC049190polymerase (RNA) I polypeptide A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033114  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_009088 NP_033114 O35134 EC 2.7.7.6 RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF000938 AAB66718 O35134 EC 2.7.7.6
BC010254 AAH10254 Q05DK4  
BC034785 AAH34785 Q05BP7  
BC049190 AAH49190 Q80Y46  
BC053744 AAH53744 O35134 EC 2.7.7.6
AK045809 BAC32498 Q8BR29  
AK082883 BAC38667 Q8BNM6  
AK087773 BAC39997 Q8C2X2  
AK134239 BAE22059 Q3UZ02  
AK147379 BAE27874 Q3UHI3  
AK160785 BAE36009 Q3TUG2  
AK160970 BAE36122 Q3TU49  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Polr1a NP_033114 R.norvegicus Polr1a 83581   NP_113960 94
H.sapiens POLR1A 25885 Gene Info NP_056240 87
D.melanogaster RpI1 36617   NP_523743 47
S.pombe nuc1 2540873   NP_596300 43
C.elegans Y48E1A.1 175015   NP_001022450 42
S.cerevisiae RPA190 854519   NP_014986 41
A.thaliana NRPA1 824935   NP_191325 40
P.falciparum PFE0465c 812845   XP_001351652 39
N.crassa NCU01638 3872153   XP_956006 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta