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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Hlx, H2.0-like homeobox
Sequence ID:NM_008250
Entrez Gene ID:15284
Ensembl ID:ENSMUSG00000039377

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1 H5|1 99.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 184727146 - 184732451

NM_008250 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
27871186551025186551869
8721056186553738186553922
10571236186554569186554748
12372171186555437186556371

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
1380899Full LengthBC064068H2.0-like homeobox
6430838IncompleteBC050146H2.0-like homeobox

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032276  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008250 NP_032276 Q61670
Q549B7
Homeobox

Related Sequences

 
mRNAGenPeptSwissProt
BC050146 AAH50146 Q80YV1
BC064068 AAH64068 Q6P3B7
AK154090 BAE32368 Q61670
Q549B7
X58250 CAA41204 Q61670
Q549B7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hlx NP_032276 R.norvegicus Hlx 364069   NP_001071142 97
H.sapiens HLX 3142 Gene Info NP_068777 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)