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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Oxct1, 3-oxoacid CoA transferase 1
Sequence ID:NM_024188
Entrez Gene ID:67041
Ensembl ID:ENSMUSG00000022186

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15 A1|15

Chromosomal Position (from UCSC)

Chromosomal Position:15: 4026700 - 4153962

 Exon Info From UCSC:
NM_024188

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2598824Full LengthBC0034223-oxoacid CoA transferase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_077150  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_024188 NP_077150 Q9D0K2 EC 2.8.3.5 CoA_trans

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC003422 AAH03422 Q9D0K2 EC 2.8.3.5
EF095212 ABL01516 A1E285  
AK009027 BAB26035 Q9D0K2 EC 2.8.3.5
AK010790 BAB27184 Q9CRF4  
AK011354 BAB27562 Q9D0K2 EC 2.8.3.5
AB085609 BAC05524 Q9D0K2 EC 2.8.3.5
AK146158 BAE26941 Q3UK61  
AK146342 BAE27096 Q3UJQ9  
AK151662 BAE30590 Q9D0K2 EC 2.8.3.5
AK151695 BAE30619 Q3U9P7  
AK167681 BAE39730 Q9D0K2 EC 2.8.3.5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Oxct1 NP_077150 R.norvegicus Oxct1 690163   NP_001121052 98
H.sapiens OXCT1 5019 Gene Info NP_000427 92
A.gambiae AgaP_AGAP006096 1276768   XP_316153 67
C.elegans C05C10.3 174548   NP_496144 66
D.melanogaster CG1140 38261   NP_647683 62
N.crassa NCU06881 3875425   XP_959228 57

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)