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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sfxn1, sideroflexin 1
Sequence ID:NM_027324
Entrez Gene ID:14057
Ensembl ID:ENSMUSG00000021474

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, nervous, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:13 B1|13 35.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:13: 54071877 - 54108342

 Exon Info From UCSC:
NM_027324

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3599636Full LengthBC005743sideroflexin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_081600  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_027324 NP_081600 Q99JR1 Mtc

Related Sequences

 
mRNAGenPeptSwissProt
BC005743 AAH05743 Q99JR1
AF325260 AAK39428 Q99JR1
AK076205 BAC36253 Q8BPC9
AK151110 BAE30120 Q99JR1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sfxn1 NP_081600 R.norvegicus Sfxn1 364678   NP_001012213 99
H.sapiens SFXN1 94081 Gene Info NP_073591 95
A.gambiae AgaP_AGAP004519 1274665   XP_313819 62
C.elegans sfxn-1.5 181353   NP_509949 54
D.melanogaster CG11739 40552   NP_649460 54

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)