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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Vps72, vacuolar protein sorting 72 (yeast)
Sequence ID:NM_009336
Entrez Gene ID:21427
Ensembl ID:ENSMUSG00000008958

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3|3 F2

Chromosomal Position (from UCSC)

Chromosomal Position:3: 95116525 - 95119302

NM_009336 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11739491496394915135
1743269492214694922298
3274419492257094922684
4426189492305294923228
6197639492518394925327
76414369492630094926972

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2651158Full LengthBC004834vacuolar protein sorting 72 (yeast)
5692301Full LengthBC043029vacuolar protein sorting 72 (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033362  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009336 NP_033362 Q62481 YL1
YL1_C

Related Sequences

 
mRNAGenPeptSwissProt
BC004834 AAH04834 Q62481
BC043029 AAH43029 Q62481
D43643 BAA07758 Q62481
AK140284 BAE24317 Q62481
AK155191 BAE33106 Q62481

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Vps72 NP_033362 R.norvegicus Vps72 310661   NP_001101165 98
H.sapiens VPS72 6944 Gene Info NP_005988 97
D.melanogaster YL-1 34516   NP_609475 46
A.gambiae AgaP_AGAP001565 1281603   XP_321546 42
A.thaliana SWC2 818246   NP_181212 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)