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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Slco4a1, solute carrier organic anion transporter family, member 4a1
Sequence ID:NM_148933
Entrez Gene ID:108115
Ensembl ID:ENSMUSG00000038963

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 H4|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 180456333 - 180474850

 Exon Info From UCSC:
NM_148933

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4501966Full LengthBC030719solute carrier organic anion transporter family, member 4a1
4505508Full LengthBC030720solute carrier organic anion transporter family, member 4a1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_683735  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_148933 NP_683735 Q8K078 OATP
Kazal_2

Related Sequences

 
mRNAGenPeptSwissProt
BC030719 AAH30719 Q8K078
BC030720 AAH30720 Q8K078
BC033602 AAH33602 Q8K078
AK033598 BAC28379 Q8K078

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slco4a1 NP_683735 R.norvegicus Slco4a1 171144   NP_598292 96
H.sapiens SLCO4A1 28231 Gene Info NP_057438 77
A.gambiae AgaP_AGAP008712 1275562   XP_314819 50
D.melanogaster Oatp26F 33927   NP_609055 48
C.elegans Y70G10A.3 190573   NP_499267 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)