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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Shprh, SNF2 histone linker PHD RING helicase
Sequence ID:NM_001077707
NM_172937
Entrez Gene ID:268281
Ensembl ID:ENSMUSG00000090112

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10 A1|10

Chromosomal Position (from UCSC)

Chromosomal Position:10: 11149505 - 11162159

 Exon Info From UCSC:
NM_001077707
NM_172937

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6468603Full LengthBC055003SNF2 histone linker PHD RING helicase
3596125IncompleteBC006883SNF2 histone linker PHD RING helicase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_766525  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001077707 NP_001071175 Q7TPQ3  
NM_172937 NP_766525   SNF2_N
Helicase_C
Linker_histone

Related Sequences

 
mRNAGenPeptSwissProt
BC006883 AAH06883 Q7TPQ3
BC055003 AAH55003 Q7TPQ3
AY162264 AAO26654 Q7TPQ3
AY162266 AAO26656 Q7TPQ3
AK053448 BAC35389 Q7TPQ3
AK082160 BAC38428 Q7TPQ3
AK145015 BAE26184 Q3UMB4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Shprh NP_001071175 R.norvegicus Shprh 308282   NP_001100940 93
H.sapiens SHPRH 257218 Gene Info NP_001036148 87
A.thaliana AT2G40770 818674   NP_181609 39
A.gambiae AgaP_AGAP007417 1269771   XP_308421 34
D.melanogaster CG7376 38715   NP_648034 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)