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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Zscan4c, zinc finger and SCAN domain containing 4C
Sequence ID:NM_001013765
Entrez Gene ID:245109
Ensembl ID:ENSMUSG00000054272

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7 A1|7

Chromosomal Position (from UCSC)

Chromosomal Position:7: 11005744 - 11010547

NM_001013765 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11071159109311591199
1085791159180711592278
5807391159411511594274
74022761159435911595895

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30009434Full LengthBC050218zinc finger and SCAN domain containing 4C

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001013787  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001013765 NP_001013787 Q80VJ6 zf-C2H2

Related Sequences

 
mRNAGenPeptSwissProt
BC050218 AAH50218 Q80VJ6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Zscan4c NP_001013787 M.musculus Zscan4f 665902 Gene Info NP_001103786 99
M.musculus Zscan4b 665780 Gene Info NP_001172102 96
M.musculus Zscan4e 665848 Gene Info NP_001155274 96
M.musculus Zscan4d 545913 Gene Info NP_001093656 95
R.norvegicus RGD1561748 299652   XP_234953 68
R.norvegicus RGD1563625 503124   XP_578644 68

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)