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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Slc46a1, solute carrier family 46, member 1
Sequence ID:NM_026740
Entrez Gene ID:52466
Ensembl ID:ENSMUSG00000020829

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B5|11 45.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 78465717 - 78471930

NM_026740 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13057827920278279506
30611587827985278280704
115912427828212678282209
124313997828419678284352
140019737828487278285445

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5052851Full LengthBC057976solute carrier family 46, member 1
4984454IncompleteBC024522solute carrier family 46, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_081016  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_026740 NP_081016 Q6PEM8 MFS_1

Related Sequences

 
mRNAGenPeptSwissProt
BC024522 AAH24522 Q6PEM8
BC057976 AAH57976 Q6PEM8
AK003278 BAB22685 Q6PEM8
AK220201 BAD90126 Q6PEM8
AK170505 BAE41843 Q6PEM8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slc46a1 NP_081016 R.norvegicus Slc46a1 303333   NP_001013991 96
H.sapiens SLC46A1 113235 Gene Info NP_542400 87

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)