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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col8a1, collagen, type VIII, alpha 1
Sequence ID:NM_007739
Entrez Gene ID:12837
Ensembl ID:ENSMUSG00000068196

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16 C1.1|16

Chromosomal Position (from UCSC)

Chromosomal Position:16: 57626882 - 57754715

NM_007739 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
145625762436857628929
456348935763242357632753
489450125767844957678567
501351105775475257754849

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3674027Full LengthBC011061collagen, type VIII, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031765  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007739 NP_031765 Q00780 C1q
Collagen

Related Sequences

 
mRNAGenPeptSwissProt
BC011061 AAH11061 Q00780
AK018742 BAB31383 Q00780
AK032048 BAC27670 Q00780
AK046370 BAC32693 Q00780
AK159542 BAE35169 Q00780

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col8a1 NP_031765 R.norvegicus Col8a1 304021   NP_001100570 98
H.sapiens COL8A1 1295 Gene Info NP_065084 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)