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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Socs1, suppressor of cytokine signaling 1
Sequence ID:NM_001271603
NM_009896
Entrez Gene ID:12703
Ensembl ID:ENSMUSG00000038037

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16 A1|16 3.4 cM

Chromosomal Position (from UCSC)

Chromosomal Position:16: 10783817 - 10784871

Transcript StartTranscript EndChromosomal Start Chromosomal End
211141078390110785013
111512201078552310785628

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40130643Full LengthBC132366suppressor of cytokine signaling 1
40130645Full LengthBC132368suppressor of cytokine signaling 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034026  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001271603 NP_001258532    
NM_009896 NP_034026 O35716 SH2
SOCS_box

Related Sequences

 
mRNAGenPeptSwissProt
U88325 AAB62400 O35716
AF120490 AAD24777 O35716
AF180302 AAD53324 O35716
BC132366 AAI32367 O35716
BC132368 AAI32369 O35716
AB000677 BAA21538 O35716
AB000710 BAA21539 O35716
AK028632 BAC26040 O35716
AK154706 BAE32775 O35716

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Socs1 NP_034026 R.norvegicus Socs1 252971   NP_665886 98
H.sapiens SOCS1 8651 Gene Info NP_003736 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta