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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Tnf, tumor necrosis factor
Sequence ID:NM_013693
Entrez Gene ID:21926
Ensembl ID:ENSMUSG00000024401

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 19.06 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 35199379 - 35202006

NM_013693 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
211743533633535337507
117512223533780235337849
122312773533802835338082
127816193533859935338940

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860739Full LengthBC137720tumor necrosis factor
40126376Full LengthBC117057tumor necrosis factor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038721  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013693 NP_038721 Q3U593
P06804
TNF

Related Sequences

 
mRNAGenPeptSwissProt
M13049 AAA40457 P06804
M11731 AAA40458 Q3U593
P06804
BC117057 AAI17058 Q3U593
BC137720 AAI37721 Q3U593
AY423855 AAR00346 Q6TDG3
AK153319 BAE31899 Q3U593
P06804
AK153800 BAE32187 Q3U593
P06804
AK154223 BAE32445 Q3U4I6
AK155964 BAE33525 Q3U593
P06804
X02611 CAA26457 Q3U593
P06804

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tnf NP_038721 R.norvegicus Tnf 24835   NP_036807 94
H.sapiens TNF 7124 Gene Info NP_000585 80

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta