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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Pde6d, phosphodiesterase 6D, cGMP-specific, rod, delta
Sequence ID:NM_008801
Entrez Gene ID:18582
Ensembl ID:ENSMUSG00000026239

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, t-cell, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1 D|1

Chromosomal Position (from UCSC)

Chromosomal Position:1: 86543015 - 86582460

NM_008801 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
185868843958988440157
5876928844227688442381
6938188844323188443356
8199078844410388444191
90811098847887488479075

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3964336Full LengthBC005636phosphodiesterase 6D, cGMP-specific, rod, delta

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032827  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008801 NP_032827 Q3TDQ8
O55057
GMP_PDE_delta

Related Sequences

 
mRNAGenPeptSwissProt
AF039216 AAC25686 Q3TDQ8
O55057
BC005636 AAH05636 Q3TDQ8
O55057
AK141209 BAE24588 Q3URU9
AK170067 BAE41543 Q3TDQ8
O55057

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pde6d NP_032827 R.norvegicus Pde6d 363272   NP_001102276 99
H.sapiens PDE6D 5147 Gene Info NP_002592 98
C.elegans pdl-1 191741   NP_495490 69
A.gambiae PDE6D_ANOGA 1280884   XP_320754 67
D.melanogaster PrBP 34196   NP_609246 63

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)