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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Hs2st1, heparan sulfate 2-O-sulfotransferase 1
Sequence ID:NM_011828
Entrez Gene ID:23908
Ensembl ID:ENSMUSG00000040151

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3 H2|3

Chromosomal Position (from UCSC)

Chromosomal Position:3: 144433560 - 144569894

NM_011828 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13608144094070144097677
36093766144098425144098582
37673864144100558144100655
38654003144110233144110371
40044089144116915144117000
40904328144128010144128248
43294811144232697144233179

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5068428Full LengthBC025443heparan sulfate 2-O-sulfotransferase 1
6849136Full LengthBC059008heparan sulfate 2-O-sulfotransferase 1
3603308IncompleteBC016560heparan sulfate 2-O-sulfotransferase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035958  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011828 NP_035958 Q8R3H7 HS2ST

Related Sequences

 
mRNAGenPeptSwissProt
AF060178 AAC40135 Q8R3H7
AF169243 AAF59900 Q8R3H7
BC025443 AAH25443 Q8R3H7
BC059008 AAH59008 Q8R3H7
AK088698 BAC40511 Q8R3H7
AK165112 BAE38041 Q8R3H7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hs2st1 NP_035958 R.norvegicus Hs2st1 292155   NP_001093988 98
H.sapiens HS2ST1 9653 Gene Info NP_036394 97
A.gambiae AgaP_AGAP008166 3291665   XP_317295 60
D.melanogaster Hs2st 44433   NP_477339 58

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)