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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ccl1, chemokine (C-C motif) ligand 1
Sequence ID:NM_011329
Entrez Gene ID:20290
Ensembl ID:ENSMUSG00000020702

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 C|11 47.32 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 82176873 - 82179791

NM_011329 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12468199016781990412
2473618199152081991634
3625058199317081993313

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40129729Full LengthBC120806chemokine (C-C motif) ligand 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035459  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011329 NP_035459 P10146 IL8

Related Sequences

 
mRNAGenPeptSwissProt
M23501 AAA40147 P10146
M17957 AAB39499 P10146
AF065924 AAF15374 P10146
AF065925 AAF15375 P10146
AF065926 AAF15376 P10146
AF065927 AAF15377 P10146
AF065928 AAF15378 P10146
BC120806 AAI20807 Q0VB35
AK019040 BAB31521 P10146

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ccl1 NP_035459 R.norvegicus Ccl1 688605   XP_001067590 65
H.sapiens CCL1 6346 Gene Info NP_002972 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)