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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Casq1, calsequestrin 1
Sequence ID:NM_009813
Entrez Gene ID:12372
Ensembl ID:ENSMUSG00000007122

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1 H3|1 94.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 172209896 - 172219833

 Exon Info From UCSC:
NM_009813

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
876739Full LengthBC064057calsequestrin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033943  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009813 NP_033943 O09165 Calsequestrin

Related Sequences

 
mRNAGenPeptSwissProt
U93291 AAC63616 O09165
BC064057 AAH64057 Q6P3C3
AK049865 BAC33963 Q8C7M8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Casq1 NP_033943 R.norvegicus Casq1 686019   NP_001153066 99
H.sapiens CASQ1 844 Gene Info NP_001222 95
C.elegans csq-1 181563   NP_510438 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)