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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Atp5c1, ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
Sequence ID:NM_001112738
NM_020615
Entrez Gene ID:11949
Ensembl ID:ENSMUSG00000025781

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 A1|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 10056037 - 10080436

 Exon Info From UCSC:
NM_001112738
NM_020615

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2655884Full LengthBC010700ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
6404794IncompleteBC055785ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065640  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001112738 NP_001106209    
NM_020615 NP_065640 Q91VR2
Q9ERA8
ATP-synt

Related Sequences

 
mRNAGenPeptSwissProt
BC010700 AAH10700 Q3UD06
Q91VR2
D21073 BAB17293 Q9ERA8
AK007063 BAB24848 Q9D9D7
AK088164 BAC40184 Q8C2Q8
AK146434 BAE27168 Q3UD06
Q91VR2
AK150307 BAE29456 Q3UD06
Q91VR2
AK158675 BAE34606 Q3UD06
Q91VR2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Atp5c1 NP_065640 R.norvegicus Atp5c1 116550   NP_446277 95
H.sapiens ATP5C1 509 Gene Info NP_001001973 91
D.melanogaster ATPsyn-gamma 43507   NP_524550 59
C.elegans Y69A2AR.18 177038   NP_500214 59
A.gambiae AgaP_AGAP007966 1277984   XP_317504 56
N.crassa NCU09119 3875039   XP_958891 44
S.cerevisiae ATP3 852327   NP_009595 43
P.falciparum PF13_0061 814039   XP_001349841 41
A.thaliana ATP3 817866   NP_180863 40
S.pombe atp3 2539839   NP_595430 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)