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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sp3, trans-acting transcription factor 3
Sequence ID:NM_001018042
NM_001098425
NM_011450
Entrez Gene ID:20687
Ensembl ID:ENSMUSG00000027109

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, testis, thymus, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 C3|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 72936647 - 72979597

 Exon Info From UCSC:
NM_001018042
NM_001098425

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6833706Full LengthBC079874trans-acting transcription factor 3
5323205IncompleteBC027797trans-acting transcription factor 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001018052  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001018042 NP_001018052 O70494 zf-C2H2
NM_001098425 NP_001091895    

Related Sequences

 
mRNAGenPeptSwissProt
AF062567 AAC16322 O70494
BC027797 AAH27797 O70494
BC079874 AAH79874 O70494
AK004607 BAC25090 O70494
AK081759 BAC38323 Q8C4L4
AK132702 BAE21310 O70494

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sp3 NP_001018052 R.norvegicus Sp3 367846   XP_002729217 99
H.sapiens SP3 6670 Gene Info NP_003102 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta