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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Rxrb, retinoid X receptor beta
Sequence ID:NM_001205214
NM_001205215
NM_001205216
NM_011306
Entrez Gene ID:20182
Ensembl ID:ENSMUSG00000039656

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 18.49 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 34032385 - 34037815

Transcript StartTranscript EndChromosomal Start Chromosomal End
13723416879634169167
3735903416977134169988
5917473417049934170655
7489273417096634171145
92811003417259834172770
110112303417326934173398
123113633417356934173701
136414553417381734173908
145615613417411134174216
156225773417432834175343

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5132301Full LengthBC019432retinoid X receptor beta
6581828Full LengthBC049773retinoid X receptor beta

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035436  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001205214 NP_001192143    
NM_001205215 NP_001192144    
NM_001205216 NP_001192145    
NM_011306 NP_035436 P28704 Hormone_recep
zf-C4

Related Sequences

 
mRNAGenPeptSwissProt
M26804 AAA37772 P28704
M84818 AAA40081 P28704
BC019432 AAH19432 Q8VCR0
BC049773 AAH49773 P28704
AK140371 BAE24359 Q8VCR0
AK159671 BAE35275 Q3TWJ1
X66224 CAA46963 P28704

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rxrb NP_035436 R.norvegicus Rxrb 361801   NP_996731 99
H.sapiens RXRB 6257 Gene Info NP_068811 97
D.melanogaster usp 31165   NP_476781 58
A.gambiae AgaP_AGAP002095 1281377   XP_320944 53

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)