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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cxcr6, chemokine (C-X-C motif) receptor 6
Sequence ID:NM_030712
Entrez Gene ID:80901
Ensembl ID:ENSMUSG00000048521

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 F|9 71.4 cM

Chromosomal Position (from UCSC)

Chromosomal Position:9: 123806487 - 123811103

NM_030712 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
169123715594123715662
701893123719048123720871

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30748222Full LengthBC096491chemokine (C-X-C motif) receptor 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_109637  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_030712 NP_109637 Q9EQ16 7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
AF305709 AAG31284 Q9EQ16
AF301018 AAG34367 Q9EQ16
BC096491 AAH96491 Q9EQ16
AK052901 BAC35196 Q9EQ16
AK137703 BAE23469 Q9EQ16
AK153914 BAE32252 Q9EQ16

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cxcr6 NP_109637 R.norvegicus Cxcr6 100124593   NP_001096057 88
H.sapiens CXCR6 10663 Gene Info NP_006555 76

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)