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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Spnb2, spectrin beta 2
Sequence ID:NM_009260
NM_175836
Entrez Gene ID:20742
Ensembl ID:ENSMUSG00000020315

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 A3.3|11 13.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 30108753 - 30198233

 Exon Info From UCSC:
NM_009260
NM_175836

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069507Full LengthBC172699spectrin beta 2
5361724IncompleteBC024833spectrin beta 2
100063049BC156448spectrin beta 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_787030  NP_033286  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009260 NP_033286   CH
Spectrin
NM_175836 NP_787030 Q62261 PH
CH
Spectrin

Related Sequences

 
mRNAGenPeptSwissProt
U73171 AAB18135 P70435
M74773 AAC42040 Q62261
AF016040 AAD01566 Q9Z2V0
AF017112 AAD01616 Q62261
BC024833 AAH24833 Q8R1C2
BC156448 AAI56449  
BC172699 AAI72699  
AK051630 BAC34698 Q8BQ35
AK079842 BAC37762 Q8C509
AK220456 BAD90485 Q5DTR4
AK157727 BAE34172 Q3TZN6
AK161119 BAE36201 Q3TTX2
AK169544 BAE41221 Q62261

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Spnb2 NP_787030 R.norvegicus Sptbn1 305614   NP_001013148 98
H.sapiens SPTBN1 6711 Gene Info NP_003119 98
A.gambiae AgaP_AGAP010895 1271052   XP_309796 59
D.melanogaster beta-Spec 32746   NP_523388 57
C.elegans unc-70 179077   NP_001024053 53

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)