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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cryaa, crystallin, alpha A
Sequence ID:NM_013501
Entrez Gene ID:12954
Ensembl ID:ENSMUSG00000024041

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 A3-B|17 17.4 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 31677950 - 31681347

NM_013501 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12453181488931815133
2463143181539331815461
3154373181650331816625
43811763181793031818668

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30602480Full LengthBC092385crystallin, alpha A
30699322Full LengthBC085170crystallin, alpha A
30699371Full LengthBC085172crystallin, alpha A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038529  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013501 NP_038529 Q546L9
P24622
HSP20
Crystallin

Related Sequences

 
mRNAGenPeptSwissProt
J00376 AAA37471 P24622
BC085170 AAH85170 Q546L9
P24622
BC085172 AAH85172 Q569M7
BC092385 AAH92385 Q569M7
AK143463 BAE25387 Q569M7
AJ310308 CAC35974 Q546L9
P24622

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cryaa NP_038529 H.sapiens CRYAA 1409 Gene Info NP_000385 95
A.gambiae AgaP_AGAP005548 1276232   XP_315550 42
A.gambiae AgaP_AGAP005547 1276231   XP_315549 40
A.gambiae AgaP_AGAP007159 1269955   XP_308609 39
A.gambiae AgaP_AGAP007158 1269956   XP_308610 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)