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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col17a1, collagen, type XVII, alpha 1
Sequence ID:NM_007732
Entrez Gene ID:12821
Ensembl ID:ENSMUSG00000025064

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19 D1|19 49.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:19: 47646345 - 47648751

 Exon Info From UCSC:
NM_007732

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40086689Full LengthBC125031collagen, type XVII, alpha 1
40086691Full LengthBC125032collagen, type XVII, alpha 1
3587589IncompleteBC003208collagen, type XVII, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031758  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007732 NP_031758   Collagen

Related Sequences

 
mRNAGenPeptSwissProt
L08407 AAA37443 Q07563
BC003208 AAH03208 Q07563
BC125031 AAI25032 Q07563
BC125032 AAI25033 Q07563
AK135150 BAE22442 Q07563

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col17a1 NP_031758 R.norvegicus Col17a1 294027   NP_001099836 94
H.sapiens COL17A1 1308 Gene Info NP_000485 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)