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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Sorl1, sortilin-related receptor, LDLR class A repeats-containing
Sequence ID:NM_011436
Entrez Gene ID:20660
Ensembl ID:ENSMUSG00000049313

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9 B|9

Chromosomal Position (from UCSC)

Chromosomal Position:9: 41968602 - 42124113

 Exon Info From UCSC:
NM_011436

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069522Full LengthBC172714sortilin-related receptor, LDLR class A repeats-containing
100063048BC156440sortilin-related receptor, LDLR class A repeats-containing

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011436 NP_035566 O88307  

Related Sequences

 
mRNAGenPeptSwissProt
AF031816 AAC16739 O88307
BC156440 AAI56441  
BC172714 AAI72714 O88307
AB015790 BAA31219 O88307
AK029071 BAC26276 Q8CE39
AK088154 BAC40177 Q8C2R1
AK137635 BAE23441 Q3UV32
AK147303 BAE27834 O88307
AK155045 BAE33011 Q3U2X9
Y12004 CAA72732 O88307

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sorl1 NP_035566 H.sapiens SORL1 6653 Gene Info NP_003096 93
A.gambiae AgaP_AGAP010896 1271050   XP_309795 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)