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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Tpm1, tropomyosin 1, alpha
Sequence ID:NM_001164248
NM_001164249
NM_001164250
NM_001164251
NM_001164252
NM_001164253
NM_001164254
NM_001164255
NM_001164256
NM_024427
Entrez Gene ID:22003
Ensembl ID:ENSMUSG00000032366

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9 C|9 40.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:9: 67027974 - 67049213

 Exon Info From UCSC:
NM_001164248
NM_001164249
NM_001164250
NM_001164251
NM_001164252
NM_001164253
NM_001164254
NM_001164255
NM_001164256
NM_024427

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9053861Full LengthBC145307tropomyosin 1, alpha
40130312Full LengthBC132035tropomyosin 1, alpha
40130314Full LengthBC132037tropomyosin 1, alpha

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_077745  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001164248 NP_001157720    
NM_001164249 NP_001157721    
NM_001164250 NP_001157722    
NM_001164251 NP_001157723    
NM_001164252 NP_001157724    
NM_001164253 NP_001157725    
NM_001164254 NP_001157726    
NM_001164255 NP_001157727    
NM_001164256 NP_001157728    
NM_024427 NP_077745 Q564G1 Tropomyosin

Related Sequences

 
mRNAGenPeptSwissProt
M22479 AAA40483 P58771
Q564G1
BC131643 AAI31644 A2RRI1
BC132035 AAI32036 Q564G1
BC132037 AAI32038 Q564G1
BC145307 AAI45308 B7ZNL3
AK002271 BAB21978 P58771
Q545Y3
AK003175 BAB22620 Q564G1
AK032942 BAC28093 Q8BSH3
AK077713 BAC36973 Q8BP43
AK168640 BAE40499 P58771
Q545Y3
AK168783 BAE40617 P58771
Q545Y3
AK169188 BAE40964 P58771
Q545Y3
X64831 CAA46043 P58771
Q545Y3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tpm1 NP_001157721 R.norvegicus Tpm1 24851   NP_001029241 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)